C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080560 Sema3f-201 ENSMUSG00000034684 10090 - 9:107681502-107710475 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080560 7.875±3.77 10.008±1.36 14.311±11.06 13.018±10.21 9.972±4.01 10.726±1.42 1.879±0.41 3.921±1.40 0.908±0.61 44.595±8.23 1.306±0.34 9.477±4.07 25.349±19.14 0.676±0.44

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0004872 IEA receptor activity
GO:0005576 IEA extracellular region
GO:0007411 IDA axon guidance
GO:0016020 IEA membrane
GO:0021612 IMP facial nerve structural organization
GO:0021637 IMP trigeminal nerve structural organization
GO:0021675 IMP nerve development
GO:0021785 IMP branchiomotor neuron axon guidance
GO:0036486 IMP ventral trunk neural crest cell migration
GO:0045499 IDA chemorepellent activity
GO:0048843 IGI negative regulation of axon extension involved in axon guidance
GO:0048846 IMP axon extension involved in axon guidance
GO:0050919 IGI negative chemotaxis
GO:0061549 IMP sympathetic ganglion development
GO:0097490 IMP sympathetic neuron projection extension
GO:0097491 IMP sympathetic neuron projection guidance
GO:1901166 IMP neural crest cell migration involved in autonomic nervous system development
GO:1902285 IMP semaphorin-plexin signaling pathway involved in neuron projection guidance
GO:1902287 IMP semaphorin-plexin signaling pathway involved in axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000002829 SEMA3F-001 protein_coding Homo_sapiens 0 2708
ENST00000413852 SEMA3F-004 protein_coding Homo_sapiens 0 3175
ENST00000414301 SEMA3F-005 protein_coding Homo_sapiens 0 994
ENST00000420831 SEMA3F-010 protein_coding Homo_sapiens 0 473
ENST00000426511 SEMA3F-006 protein_coding Homo_sapiens 0 361
ENST00000434342 SEMA3F-002 protein_coding Homo_sapiens 0 3288
ENST00000450338 SEMA3F-003 protein_coding Homo_sapiens 0 1439
ENST00000470737 SEMA3F-009 retained_intron Homo_sapiens 0 324
ENST00000493743 SEMA3F-008 retained_intron Homo_sapiens 0 586

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