C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bloom syndrome, RecQ helicase-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081314 Blm-201 ENSMUSG00000030528 10090 - 7:80454993-80535119 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081314 0.430±0.28 0.110±0.04 0.428±0.08 1.846±0.92 0.275±0.07 0.233±0.06 0.127±0.02 0.200±0.05 5.638±5.26 0.330±0.12 0.294±0.05 0.853±0.60 3.746±2.51 1.495±0.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 ISS nuclear chromosome
GO:0000723 IGI telomere maintenance
GO:0000729 ISS DNA double-strand break processing
GO:0001673 IDA male germ cell nucleus
GO:0003677 IEA DNA binding
GO:0004003 ISS ATP-dependent DNA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0005737 IDA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006281 IDA DNA repair
GO:0006310 IEA DNA recombination
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0032508 IEA DNA duplex unwinding
GO:0043140 IDA ATP-dependent 3'-5' DNA helicase activity
GO:0045120 IDA pronucleus
GO:0045950 IMP negative regulation of mitotic recombination
GO:0046632 IMP alpha-beta T cell differentiation
GO:0046641 IMP positive regulation of alpha-beta T cell proliferation
GO:0051098 IDA regulation of binding
GO:0051276 IMP chromosome organization
GO:0070244 IGI negative regulation of thymocyte apoptotic process
GO:0071479 ISS cellular response to ionizing radiation
GO:0072711 ISS cellular response to hydroxyurea
GO:0072757 ISS cellular response to camptothecin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355112 BLM-001 protein_coding Homo_sapiens 0 3572
ENST00000558599 BLM-007 processed_transcript Homo_sapiens 1e-35 154
ENST00000558825 BLM-005 retained_intron Homo_sapiens 0 1199
ENST00000559426 BLM-009 processed_transcript Homo_sapiens 0 638
ENST00000559724 BLM-003 nonsense_mediated_decay Homo_sapiens 0 3323
ENST00000560136 BLM-004 processed_transcript Homo_sapiens 0 2156
ENST00000560509 BLM-002 protein_coding Homo_sapiens 0 2712
ENST00000560559 BLM-011 retained_intron Homo_sapiens 0 566
ENST00000560821 BLM-010 processed_transcript Homo_sapiens 0 442

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