C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bloom syndrome, RecQ helicase-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000355112 BLM-001 ENSG00000197299 9606 + 15:90717327-90816165 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverLungOvaryPlacentaTestisENST00000355112
Transcript ID Adipose Bladder Brain Kidney Liver Lung Ovary Placenta Testis
ENST00000355112 0.111±0.00 0.069±0.00 0.097±0.00 0.046±0.03 0.043±0.00 0.044±0.00 0.642±0.10 0.524±0.00 0.761±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0001 VISTA 15:90522657-91123707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IMP regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000166 IEA nucleotide binding
GO:0000228 IDA nuclear chromosome
GO:0000405 IDA bubble DNA binding
GO:0000723 IEA telomere maintenance
GO:0000724 NAS double-strand break repair via homologous recombination
GO:0000729 IDA DNA double-strand break processing
GO:0000733 IDA DNA strand renaturation
GO:0000781 IDA chromosome, telomeric region
GO:0000800 IDA lateral element
GO:0001673 IEA male germ cell nucleus
GO:0002039 IPI p53 binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003697 IDA single-stranded DNA binding
GO:0003824 IEA catalytic activity
GO:0004003 IMP ATP-dependent DNA helicase activity
GO:0004386 IDA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IDA:IEA ATP binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005657 IEA replication fork
GO:0005730 IDA nucleolus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 IEA DNA replication
GO:0006281 NAS:IEA DNA repair
GO:0006310 NAS:IEA DNA recombination
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007095 IDA mitotic G2 DNA damage checkpoint
GO:0008026 IDA:IEA ATP-dependent helicase activity
GO:0009378 IDA four-way junction helicase activity
GO:0010165 IDA response to X-ray
GO:0016363 IDA nuclear matrix
GO:0016605 IDA PML body
GO:0016818 IEA hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 IDA ATPase activity
GO:0031297 IDA replication fork processing
GO:0032508 IEA DNA duplex unwinding
GO:0036310 IDA annealing helicase activity
GO:0043140 IEA ATP-dependent 3'-5' DNA helicase activity
GO:0044237 IEA cellular metabolic process
GO:0045120 IEA pronucleus
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045910 IMP negative regulation of DNA recombination
GO:0045950 IEA negative regulation of mitotic recombination
GO:0046632 IEA alpha-beta T cell differentiation
GO:0046641 IEA positive regulation of alpha-beta T cell proliferation
GO:0048478 NAS replication fork protection
GO:0051098 IEA regulation of binding
GO:0051259 IDA protein oligomerization
GO:0051276 IEA chromosome organization
GO:0051782 IMP negative regulation of cell division
GO:0051880 IDA G-quadruplex DNA binding
GO:0070244 IEA negative regulation of thymocyte apoptotic process
GO:0071479 IDA cellular response to ionizing radiation
GO:0072711 IDA cellular response to hydroxyurea
GO:0072757 IDA cellular response to camptothecin

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170315 Blm-202 protein_coding Mus_musculus 0 3572
ENSMUST00000081314 Blm-201 protein_coding Mus_musculus 0 3572

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