C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: latent transforming growth factor beta binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081496 Ltbp3-201 ENSMUSG00000024940 10090 + 19:5740904-5758532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081496
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081496 31.548±21.66 44.771±14.51 30.948±2.31 6.026±1.83 31.345±11.16 10.996±2.01 11.442±1.13 9.900±2.40 1.060±0.33 39.602±4.94 10.078±2.20 49.737±16.53 36.119±30.09 1.334±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0005509 IEA calcium ion binding
GO:0005576 IDA extracellular region
GO:0005578 ISA proteinaceous extracellular matrix
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0030502 IMP negative regulation of bone mineralization
GO:0031012 IEA extracellular matrix
GO:0032331 IMP negative regulation of chondrocyte differentiation
GO:0036363 IEA transforming growth factor beta activation
GO:0045780 IMP positive regulation of bone resorption
GO:0046849 IMP bone remodeling
GO:0050431 IEA transforming growth factor beta binding
GO:0060349 IMP bone morphogenesis
GO:0060430 IMP lung saccule development
GO:0070062 IEA extracellular vesicular exosome
GO:1902462 IEA positive regulation of mesenchymal stem cell proliferation
GO:2000741 IEA positive regulation of mesenchymal stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270176 SCYL1-001 protein_coding Homo_sapiens 6e-24 117
ENST00000279270 SCYL1-201 protein_coding Homo_sapiens 2e-22 111
ENST00000301873 LTBP3-001 protein_coding Homo_sapiens 0 3738
ENST00000322147 LTBP3-002 protein_coding Homo_sapiens 0 4268
ENST00000420247 SCYL1-002 protein_coding Homo_sapiens 6e-24 117
ENST00000524798 LTBP3-013 retained_intron Homo_sapiens 0 497
ENST00000524944 SCYL1-005 protein_coding Homo_sapiens 6e-24 117
ENST00000525364 SCYL1-014 protein_coding Homo_sapiens 6e-24 117
ENST00000526124 LTBP3-018 retained_intron Homo_sapiens 0 339
ENST00000526825 LTBP3-005 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000526927 LTBP3-006 protein_coding Homo_sapiens 0 2937
ENST00000527009 SCYL1-003 protein_coding Homo_sapiens 0.00000008 64
ENST00000527792 LTBP3-022 retained_intron Homo_sapiens 0 542
ENST00000528516 LTBP3-003 nonsense_mediated_decay Homo_sapiens 0 4268
ENST00000528545 SCYL1-013 protein_coding Homo_sapiens 2e-24 117
ENST00000529189 LTBP3-009 protein_coding Homo_sapiens 0 1773
ENST00000529371 LTBP3-016 protein_coding Homo_sapiens 0 542
ENST00000529582 LTBP3-011 retained_intron Homo_sapiens 0 837
ENST00000530785 LTBP3-010 protein_coding Homo_sapiens 0 1125
ENST00000530866 LTBP3-004 protein_coding Homo_sapiens 0 3435
ENST00000530990 LTBP3-015 retained_intron Homo_sapiens 0 398
ENST00000532290 SCYL1-016 retained_intron Homo_sapiens 2e-24 117
ENST00000532661 LTBP3-017 protein_coding Homo_sapiens 0 769
ENST00000532932 LTBP3-007 protein_coding Homo_sapiens 0 1831
ENST00000533862 SCYL1-006 protein_coding Homo_sapiens 6e-24 117
ENST00000534462 SCYL1-015 processed_transcript Homo_sapiens 1e-24 117
ENST00000536982 LTBP3-201 protein_coding Homo_sapiens 0 3738

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