C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin XVII
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081574 Syt17-201 ENSMUSG00000058420 10090 - 7:118381856-118443552 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081574
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081574 0.336±0.14 2.765±1.10 0.228±0.00 6.383±5.37 0.636±0.18 1.665±0.39 0.559±0.17 3.012±1.06 0.045±0.03 1.022±0.57 0.099±0.03 0.248±0.12 0.089±0.05 0.222±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005A1 CIL_0005A1_0002 CGP 7:118381856-118491975

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005215 IEA transporter activity
GO:0005802 IDA trans-Golgi network
GO:0006887 IEA exocytosis
GO:0008021 IEA synaptic vesicle
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085903 SYT17-201 protein_coding Danio_rerio 0 520
ENST00000355377 SYT17-001 protein_coding Homo_sapiens 0 1692
ENST00000562034 SYT17-003 protein_coding Homo_sapiens 0 1672
ENST00000562274 SYT17-009 retained_intron Homo_sapiens 0 754
ENST00000562711 SYT17-004 protein_coding Homo_sapiens 0 1829
ENST00000565183 SYT17-008 nonsense_mediated_decay Homo_sapiens 0 551
ENST00000566261 SYT17-006 protein_coding Homo_sapiens 0 418
ENST00000568115 SYT17-002 protein_coding Homo_sapiens 0 1387
ENST00000568433 SYT17-007 protein_coding Homo_sapiens 0 636
ENST00000570264 SYT17-005 protein_coding Homo_sapiens 0 422

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