C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin XV
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081823 Myo15-004 ENSMUSG00000042678 10090 + 11:60469339-60528369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081823
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081823 0.025±0.02 0.128±0.09 0.008±0.00 0.057±0.02 0.068±0.02 0.020±0.01 0.026±0.01 0.063±0.05 0.089±0.10 0.072±0.04 0.008±0.00 0.157±0.05 0.050±0.03 1.212±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000E1 CIL_0000E1_0002 CGP 11:60454591-60528369
CIL_00058Q CIL_00058Q_0003 CGP 11:60469339-60558512

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0032420 IDA stereocilium
GO:0032421 IDA stereocilium bundle
GO:0042472 IMP inner ear morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000205890 MYO15A-001 protein_coding Homo_sapiens 0 4248
ENST00000412324 MYO15A-004 processed_transcript Homo_sapiens 1e-16 92
ENST00000418233 MYO15A-009 protein_coding Homo_sapiens 0 2584
ENST00000433411 MYO15A-002 retained_intron Homo_sapiens 0 1003
ENST00000445289 MYO15A-011 retained_intron Homo_sapiens 0 436
ENST00000473013 MYO15A-003 retained_intron Homo_sapiens 0 405
ENST00000557190 MYO15A-006 processed_transcript Homo_sapiens 0 374
ENST00000578472 MYO15A-014 protein_coding Homo_sapiens 0 529
ENST00000578575 MYO15A-016 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000579848 MYO15A-010 protein_coding Homo_sapiens 0 507
ENST00000585180 MYO15A-013 protein_coding Homo_sapiens 0 446
ENST00000615845 MYO15A-201 protein_coding Homo_sapiens 0 4248

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