C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: farnesyl diphosphate synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081848 Fdps-201 ENSMUSG00000059743 10090 - 3:89093592-89101967 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081848 33.928±10.78 160.692±68.61 36.994±5.93 48.902±16.53 33.144±9.34 48.382±7.72 7.936±0.78 19.489±4.45 159.348±38.02 42.777±12.19 11.450±0.78 60.008±22.64 56.501±51.30 43.834±13.90

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004161 IEA dimethylallyltranstransferase activity
GO:0004337 IEA geranyltranstransferase activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006695 IEA cholesterol biosynthetic process
GO:0033384 IEA geranyl diphosphate biosynthetic process
GO:0044822 IEA poly(A) RNA binding
GO:0045337 IEA farnesyl diphosphate biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324432 DTX2-001 protein_coding Homo_sapiens 1e-25 122
ENST00000356657 FDPS-001 protein_coding Homo_sapiens 0 1125
ENST00000368356 FDPS-002 protein_coding Homo_sapiens 0 1125
ENST00000421583 AC114737.3-001 processed_pseudogene Homo_sapiens 3e-36 154
ENST00000424976 FDPSP1-001 processed_pseudogene Homo_sapiens 0 795
ENST00000425091 FDPSP6-001 processed_pseudogene Homo_sapiens 0 418
ENST00000429043 FDPSP7-001 processed_pseudogene Homo_sapiens 0 880
ENST00000438304 FDPSP8-001 processed_pseudogene Homo_sapiens 0 883
ENST00000442516 DTX2-009 protein_coding Homo_sapiens 3e-26 122
ENST00000447866 FDPS-021 protein_coding Homo_sapiens 0 1122
ENST00000453932 FDPSP2-001 processed_pseudogene Homo_sapiens 0 761
ENST00000461507 FDPS-012 retained_intron Homo_sapiens 0 534
ENST00000465559 FDPS-007 protein_coding Homo_sapiens 0 385
ENST00000467076 FDPS-020 protein_coding Homo_sapiens 0 1109
ENST00000468479 FDPS-003 processed_transcript Homo_sapiens 0 822
ENST00000470171 FDPS-008 processed_transcript Homo_sapiens 0 640
ENST00000471117 FDPS-013 retained_intron Homo_sapiens 0 375
ENST00000474345 FDPS-010 nonsense_mediated_decay Homo_sapiens 0 368
ENST00000477057 FDPS-009 processed_transcript Homo_sapiens 0 732
ENST00000487002 FDPS-005 retained_intron Homo_sapiens 0 339
ENST00000489003 FDPS-011 retained_intron Homo_sapiens 0 532
ENST00000489324 FDPS-018 retained_intron Homo_sapiens 0 291
ENST00000490140 FDPS-017 retained_intron Homo_sapiens 0 483
ENST00000491013 FDPS-004 protein_coding Homo_sapiens 0 717
ENST00000492244 FDPS-015 processed_transcript Homo_sapiens 0 233
ENST00000492887 FDPS-016 retained_intron Homo_sapiens 6e-28 128
ENST00000495308 FDPS-014 retained_intron Homo_sapiens 0 551
ENST00000557880 RP11-81A1.3-001 processed_pseudogene Homo_sapiens 0 913
ENST00000611010 FDPS-201 protein_coding Homo_sapiens 0 957
ENST00000612683 FDPS-019 protein_coding Homo_sapiens 0 1107

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