C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: farnesyl diphosphate synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000447866 FDPS-021 ENSG00000160752 9606 + 1:155308794-155320609 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000447866
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000447866 11.914±0.00 5.582±0.00 7.986±0.00 5.603±4.42 1.293±0.00 4.027±0.00 1.772±0.00 27.455±20.17 26.161±11.82 16.809±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000D0 CIL_0000D0_0002 CGP 1:155308748-155331114

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004161 IEA dimethylallyltranstransferase activity
GO:0004337 IEA geranyltranstransferase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006695 TAS cholesterol biosynthetic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0016032 IEA viral process
GO:0033384 IEA geranyl diphosphate biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045337 IEA farnesyl diphosphate biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081848 Fdps-201 protein_coding Mus_musculus 0 1122
ENSMUST00000170703 Gm3571-201 pseudogene Mus_musculus 0 1101
ENSMUST00000177157 Gm5873-001 processed_pseudogene Mus_musculus 0 1014
ENSMUST00000122020 Gm8163-001 processed_pseudogene Mus_musculus 0 974

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