C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translocase of inner mitochondrial membrane 50
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081946 Timm50-001 ENSMUSG00000003438 10090 - 7:28305516-28312072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081946
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081946 33.011±4.89 22.937±5.31 11.841±1.57 24.553±10.92 22.251±11.67 19.134±3.43 22.784±3.54 32.762±10.31 23.530±15.78 11.900±2.00 15.129±5.53 24.236±6.84 20.407±2.92 10.849±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UV CIL_0006UV_0002 CGP 7:28293553-28312072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001836 ISA release of cytochrome c from mitochondria
GO:0004721 ISA phosphoprotein phosphatase activity
GO:0004722 ISS protein serine/threonine phosphatase activity
GO:0004725 ISS protein tyrosine phosphatase activity
GO:0005134 ISA interleukin-2 receptor binding
GO:0005739 IDA mitochondrion
GO:0005743 ISS mitochondrial inner membrane
GO:0005744 ISS mitochondrial inner membrane presequence translocase complex
GO:0006470 ISS protein dephosphorylation
GO:0007006 ISS mitochondrial membrane organization
GO:0015031 IEA protein transport
GO:0016021 IEA integral component of membrane
GO:0016607 IEA nuclear speck
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0043021 IEA ribonucleoprotein complex binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000048423 timm50-001 protein_coding Danio_rerio 0 287
ENST00000314349 TIMM50-001 protein_coding Homo_sapiens 0 1338
ENST00000544017 TIMM50-201 protein_coding Homo_sapiens 0 1362
ENST00000594583 TIMM50-017 protein_coding Homo_sapiens 0 712
ENST00000595961 TIMM50-003 retained_intron Homo_sapiens 0 785
ENST00000597552 TIMM50-019 retained_intron Homo_sapiens 0 414
ENST00000597666 TIMM50-010 protein_coding Homo_sapiens 0 562
ENST00000599733 TIMM50-015 nonsense_mediated_decay Homo_sapiens 0 529
ENST00000599794 TIMM50-008 protein_coding Homo_sapiens 0 505
ENST00000601252 TIMM50-005 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000601358 TIMM50-002 nonsense_mediated_decay Homo_sapiens 0 889
ENST00000601403 TIMM50-011 protein_coding Homo_sapiens 0 671
ENST00000602028 TIMM50-012 protein_coding Homo_sapiens 0 627
ENST00000602265 TIMM50-016 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000607714 TIMM50-021 protein_coding Homo_sapiens 0 1328

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