C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 217
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081989 Rnf217-001 ENSMUSG00000063760 10090 - 10:31493193-31609184 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081989
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081989 1.853±0.98 6.329±0.51 1.546±0.12 1.237±0.51 2.361±1.06 2.011±0.61 0.769±0.11 0.975±0.23 1.947±1.56 2.987±0.82 1.073±0.08 6.908±3.87 0.427±0.36 0.386±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OC CIL_0008OC_0002 VISTA 10:30928891-31529864
CIL_0008OJ CIL_0008OJ_0002 VISTA 10:30972653-31573675
CIL_0002QP CIL_0002QP_0002 CGP 10:31332380-31609184
CIL_00068V CIL_00068V_0002 CGP 10:31493193-32890462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359704 RNF217-003 protein_coding Homo_sapiens 0 953
ENST00000368414 RNF217-005 protein_coding Homo_sapiens 0 1303
ENST00000368415 RNF217-009 retained_intron Homo_sapiens 0 750
ENST00000432158 RNF217-001 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000454842 RNF217-008 processed_transcript Homo_sapiens 0 287
ENST00000519565 RNF217-006 nonsense_mediated_decay Homo_sapiens 0 1306
ENST00000519971 RNF217-007 processed_transcript Homo_sapiens 0 243
ENST00000521654 RNF217-002 protein_coding Homo_sapiens 0 1759
ENST00000560949 RNF217-201 protein_coding Homo_sapiens 0 1408

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