C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084309 Cldn19-001 ENSMUSG00000066058 10090 + 4:119255414-119259855 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000084309
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000084309 0.255±0.06 0.157±0.05 0.169±0.07 0.331±0.00 2.328±1.12 0.033±0.01 0.154±0.00 29.789±4.06 0.018±0.01 0.424±0.07 0.664±0.21 0.120±0.06 0.052±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N2 CIL_0008N2_0002 VISTA 4:118719151-119320076
CIL_0008PM CIL_0008PM_0002 VISTA 4:118938785-119540197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IMP structural molecule activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016323 ISA basolateral plasma membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0019227 IMP neuronal action potential propagation
GO:0030054 IDA cell junction
GO:0042802 ISS identical protein binding
GO:0043296 ISA apical junction complex
GO:0043297 IMP apical junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296387 CLDN19-001 protein_coding Homo_sapiens 0 933
ENST00000372539 CLDN19-002 protein_coding Homo_sapiens 0 797
ENST00000539749 CLDN19-201 protein_coding Homo_sapiens 0 516

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