C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: astrotactin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084496 Astn2-201 ENSMUSG00000028373 10090 - 4:65380803-66404483 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084496
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084496 3.033±2.29 0.843±0.18 0.532±0.26 5.201±2.65 0.406±0.15 0.589±0.08 0.197±0.08 0.815±0.39 0.164±0.11 4.149±0.51 0.296±0.04 1.223±0.51 0.108±0.05 0.136±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008GA CIL_0008GA_0002 VISTA 4:64937235-65539737
CIL_0004FO CIL_0004FO_0002 CGP 4:65124174-66404611
CIL_0004FP CIL_0004FP_0002 CGP 4:65380803-66404611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IDA endosome
GO:0016021 IDA integral component of membrane
GO:0060187 IDA cell pole
GO:2000009 IDA negative regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281881 ASTN1-006 processed_transcript Homo_sapiens 7e-19 100
ENST00000288520 ASTN2-002 protein_coding Homo_sapiens 0 1975
ENST00000313400 ASTN2-201 protein_coding Homo_sapiens 0 4161
ENST00000341734 ASTN2-006 protein_coding Homo_sapiens 0 1598
ENST00000358637 ASTN2-004 protein_coding Homo_sapiens 0 771
ENST00000361209 ASTN2-001 protein_coding Homo_sapiens 0 5347
ENST00000361477 ASTN2-202 protein_coding Homo_sapiens 0 4951
ENST00000361833 ASTN1-001 protein_coding Homo_sapiens 2e-18 100
ENST00000367657 ASTN1-002 protein_coding Homo_sapiens 1e-18 100
ENST00000373986 ASTN2-005 protein_coding Homo_sapiens 0 4084
ENST00000417725 ASTN2-003 protein_coding Homo_sapiens 3e-39 165
ENST00000424564 ASTN1-003 protein_coding Homo_sapiens 8e-19 100

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