C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: speedy homolog B (Xenopus laevis)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085733 Spdyb-001 ENSMUSG00000039296 10090 - 5:143216316-143225882 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaTestisENSMUST00000085733
Transcript ID Brain Placenta Testis
ENSMUST00000085733 0.008±0.00 0.003±0.00 2.990±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 ISS nucleus
GO:0007049 IEA cell cycle
GO:0019901 IPI protein kinase binding
GO:0045737 IDA positive regulation of cyclin-dependent protein serine/threonine kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258704 SPDYE1-001 protein_coding Homo_sapiens 0 248
ENST00000341656 SPDYE2-001 protein_coding Homo_sapiens 0 248
ENST00000355920 SPDYE7P-001 processed_transcript Homo_sapiens 0 259
ENST00000420373 SPDYE7P-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 259
ENST00000432940 SPDYE2-201 protein_coding Homo_sapiens 0 248
ENST00000436228 SPDYE2B-201 protein_coding Homo_sapiens 0 248
ENST00000455020 SPDYE2B-002 protein_coding Homo_sapiens 0 248
ENST00000455862 SPDYE5-201 protein_coding Homo_sapiens 0 259
ENST00000507450 SPDYE2B-001 protein_coding Homo_sapiens 0 248
ENST00000507918 SPDYE2-002 protein_coding Homo_sapiens 0 248
ENST00000510091 AC007000.12-001 unprocessed_pseudogene Homo_sapiens 0 272
ENST00000515340 AC004980.11-001 unprocessed_pseudogene Homo_sapiens 0 265
ENST00000563237 SPDYE6-001 protein_coding Homo_sapiens 0 254
ENST00000582158 CTD-2510F5.2-001 unprocessed_pseudogene Homo_sapiens 0 259
ENST00000624640 SPDYE5-202 protein_coding Homo_sapiens 0 259
ENST00000625065 SPDYE5-001 protein_coding Homo_sapiens 0 259

Loading