C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: immunoglobulin joining chain
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087033 Igj-001 ENSMUSG00000067149 10090 - 5:88520512-88527891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087033
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087033 6.235±5.39 0.694±0.20 0.238±0.10 0.336±0.05 16.797±5.10 447.659±37.42 1.338±0.41 2.886±0.56 0.376±0.33 16.466±10.08 0.733±1.30 8.488±3.56 0.557±0.79 0.547±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000M1 CIL_0000M1_0002 CGP 5:88487982-88527891
CIL_0000D5 CIL_0000D5_0002 CGP 5:88520512-88556083

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001895 IEA retina homeostasis
GO:0002250 IEA adaptive immune response
GO:0003094 IEA glomerular filtration
GO:0003697 IEA single-stranded DNA binding
GO:0003823 ISS antigen binding
GO:0005615 IEA extracellular space
GO:0006959 ISS humoral immune response
GO:0019731 IEA antibacterial humoral response
GO:0019862 IDA IgA binding
GO:0031210 IEA phosphatidylcholine binding
GO:0032461 IDA positive regulation of protein oligomerization
GO:0034987 IMP immunoglobulin receptor binding
GO:0042803 IEA protein homodimerization activity
GO:0042834 IEA peptidoglycan binding
GO:0045087 IEA innate immune response
GO:0060267 IEA positive regulation of respiratory burst
GO:0070062 IEA extracellular vesicular exosome
GO:0071748 IEA monomeric IgA immunoglobulin complex
GO:0071750 IMP dimeric IgA immunoglobulin complex
GO:0071751 IEA secretory IgA immunoglobulin complex
GO:0071752 IEA secretory dimeric IgA immunoglobulin complex
GO:0071756 IEA pentameric IgM immunoglobulin complex
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254801 IGJ-001 protein_coding Homo_sapiens 0 527
ENST00000391614 IGJ-004 protein_coding Homo_sapiens 0 333
ENST00000470866 IGJ-002 protein_coding Homo_sapiens 0 187
ENST00000510437 IGJ-005 protein_coding Homo_sapiens 0 425
ENST00000510614 IGJ-006 protein_coding Homo_sapiens 0 350
ENST00000543780 IGJ-201 protein_coding Homo_sapiens 0 527

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