C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087556 Smc5-201 ENSMUSG00000024943 10090 - 19:23206441-23273897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087556
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087556 1.581±1.21 2.337±0.91 1.210±0.00 6.042±1.45 1.619±0.68 1.208±0.70 0.782±0.45 0.446±0.19 2.013±1.01 1.657±0.25 0.575±0.21 2.639±2.62 4.810±3.20 15.302±15.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000F3 CIL_0000F3_0002 CGP 19:23206441-23448322

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000722 ISS telomere maintenance via recombination
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0000781 ISS chromosome, telomeric region
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0007067 IEA mitotic nuclear division
GO:0016605 ISS PML body
GO:0030054 IEA cell junction
GO:0030915 ISS Smc5-Smc6 complex
GO:0034184 ISS positive regulation of maintenance of mitotic sister chromatid cohesion
GO:0045842 ISS positive regulation of mitotic metaphase/anaphase transition
GO:0090398 ISS cellular senescence

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361138 SMC5-001 protein_coding Homo_sapiens 0 2809
ENST00000471372 SMC5-003 retained_intron Homo_sapiens 0 833
ENST00000475540 SMC5-002 retained_intron Homo_sapiens 0 291
ENST00000534576 RP11-510I21.1-001 processed_pseudogene Homo_sapiens 0 713

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