C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: 2-deoxyribose-5-phosphate aldolase homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087675 Dera-201 ENSMUSG00000030225 10090 + 6:137754542-137837891 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087675
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087675 7.007±2.25 3.697±0.69 5.290±0.50 1.721±0.78 4.976±1.67 10.162±1.29 1.542±0.24 22.130±1.81 23.968±11.23 3.642±0.88 2.598±0.52 5.431±0.89 20.855±10.10 3.193±1.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000896 CIL_000896_0002 VISTA 6:137523549-138124777
CIL_0005FF CIL_0005FF_0002 CGP 6:137735078-137837891
CIL_0005FG CIL_0005FG_0002 CGP 6:137754542-138079916

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004139 IEA deoxyribose-phosphate aldolase activity
GO:0005737 IEA cytoplasm
GO:0009264 IEA deoxyribonucleotide catabolic process
GO:0046121 IEA deoxyribonucleoside catabolic process
GO:0046386 IEA deoxyribose phosphate catabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000428559 DERA-001 protein_coding Homo_sapiens 0 1022
ENST00000526521 DERA-005 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000526530 DERA-003 protein_coding Homo_sapiens 0 1000
ENST00000528821 DERA-002 nonsense_mediated_decay Homo_sapiens 0 619
ENST00000530274 DERA-009 retained_intron Homo_sapiens 0 638
ENST00000532573 DERA-010 processed_transcript Homo_sapiens 0 263
ENST00000532964 DERA-007 protein_coding Homo_sapiens 0 377
ENST00000533447 DERA-008 protein_coding Homo_sapiens 0 785

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