C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lectin, galactose binding, soluble 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000089377 Lgals1-201 ENSMUSG00000068220 10090 + 15:78926725-78930465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000089377
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000089377 1599.844±637.51 172.552±22.25 463.225±52.49 44.577±25.28 393.167±76.21 121.873±10.50 149.509±12.21 119.332±13.51 166.673±199.91 116.761±13.49 229.225±12.51 325.504±61.89 886.520±429.55 30.084±11.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_00040C CIL_00040C_0002 CGP 15:78926725-78943634

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IEA glycoprotein binding
GO:0002317 IDA plasma cell differentiation
GO:0004871 IEA signal transducer activity
GO:0005515 IPI protein binding
GO:0005534 NAS galactose binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006915 IEA apoptotic process
GO:0007157 NAS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007165 IEA signal transduction
GO:0009986 IEA cell surface
GO:0010812 IEA negative regulation of cell-substrate adhesion
GO:0010977 IEA negative regulation of neuron projection development
GO:0016936 IEA galactoside binding
GO:0030246 IDA carbohydrate binding
GO:0030395 IEA lactose binding
GO:0031012 IEA extracellular matrix
GO:0031295 IDA T cell costimulation
GO:0033555 IEA multicellular organismal response to stress
GO:0034120 IEA positive regulation of erythrocyte aggregation
GO:0042493 IEA response to drug
GO:0042803 IEA protein homodimerization activity
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043236 IEA laminin binding
GO:0044822 IEA poly(A) RNA binding
GO:0045445 IDA myoblast differentiation
GO:0048678 IEA response to axon injury
GO:0070062 IEA extracellular vesicular exosome
GO:0071333 IEA cellular response to glucose stimulus
GO:0071407 IEA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215909 LGALS1-001 protein_coding Homo_sapiens 0 525
ENST00000425542 LGALS1-004 nonsense_mediated_decay Homo_sapiens 0 481
ENST00000454173 LGALS1-005 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000464120 LGALS1-007 retained_intron Homo_sapiens 2e-19 99
ENST00000480207 LGALS1-002 processed_transcript Homo_sapiens 1e-19 99
ENST00000489315 LGALS1-003 processed_transcript Homo_sapiens 0 481

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