C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090379 Usp53-201 ENSMUSG00000039701 10090 - 3:122933601-122984447 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090379 0.917±0.29 1.659±0.31 1.756±0.64 1.275±0.91 1.874±0.74 6.456±1.65 1.139±0.08 1.750±0.35 0.492±0.23 1.772±0.61 0.396±0.06 3.224±2.39 3.140±1.45 2.505±1.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005P CIL_00005P_0003 CGP 3:122933601-123034990

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274030 USP53-001 protein_coding Homo_sapiens 0 2353
ENST00000450251 USP53-201 protein_coding Homo_sapiens 0 2353
ENST00000507906 USP53-008 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000509769 USP53-003 nonsense_mediated_decay Homo_sapiens 0 1179
ENST00000510852 USP53-004 retained_intron Homo_sapiens 0 867

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