C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: brevican
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000090971 Bcan-201 ENSMUSG00000004892 10090 - 3:87987531-88000356 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090971
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090971 0.013±0.01 27.510±4.48 0.088±0.05 28.107±23.61 0.033±0.01 0.277±0.10 0.083±0.03 0.053±0.02 0.011±0.01 0.499±0.28 0.024±0.00 5.452±1.04 0.011±0.00 0.062±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000850 CIL_000850_0002 VISTA 3:87682625-88286876
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005540 IEA hyaluronic acid binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0007155 IEA cell adhesion
GO:0021766 IMP hippocampus development
GO:0030246 IEA carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329117 BCAN-001 protein_coding Homo_sapiens 0 1254
ENST00000361588 BCAN-002 protein_coding Homo_sapiens 0 1254
ENST00000424639 BCAN-006 protein_coding Homo_sapiens 0 649
ENST00000457777 BCAN-007 protein_coding Homo_sapiens 0 606
ENST00000479949 BCAN-004 nonsense_mediated_decay Homo_sapiens 0 652
ENST00000496038 BCAN-003 retained_intron Homo_sapiens 0 514

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