C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093162 Atxn1l-201 ENSMUSG00000069895 10090 - 8:109726451-109737739 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093162
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093162 8.097±2.07 5.956±2.03 3.754±0.29 3.391±0.75 5.937±1.36 4.776±1.41 2.951±0.62 8.665±0.67 2.723±1.01 10.294±2.87 2.748±0.68 8.317±2.66 2.968±0.84 13.203±5.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098E CIL_00098E_0002 VISTA 8:109136455-109737561
CIL_0000CI CIL_0000CI_0002 CGP 8:109705549-109737739

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0030198 IMP extracellular matrix organization
GO:0042995 IEA cell projection
GO:0048286 IGI lung alveolus development
GO:1902035 IMP positive regulation of hematopoietic stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000427980 ATXN1L-001 protein_coding Homo_sapiens 0 3474
ENST00000603431 RP11-175I17.6-001 processed_pseudogene Homo_sapiens 0 311
ENST00000604613 RP11-574K11.27-001 processed_pseudogene Homo_sapiens 0 257
ENST00000605187 RP11-144G6.13-001 processed_pseudogene Homo_sapiens 0 331
ENST00000605222 RP11-96C23.12-001 processed_pseudogene Homo_sapiens 0 305

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