C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofilament, heavy polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093369 Nefh-001 ENSMUSG00000020396 10090 - 11:4938754-4948064 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093369
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093369 0.037±0.02 1.117±0.59 0.088±0.01 26.351±35.06 0.479±0.25 0.253±0.05 0.040±0.01 0.106±0.07 0.073±0.06 0.094±0.03 0.039±0.02 2.209±1.47 0.140±0.08 1.134±0.93

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IGI microtubule cytoskeleton organization
GO:0005739 IDA mitochondrion
GO:0005883 IDA neurofilament
GO:0019901 IEA protein kinase binding
GO:0030424 IDA axon
GO:0033693 IEA neurofilament bundle assembly
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0045110 IGI intermediate filament bundle assembly
GO:0045735 IEA nutrient reservoir activity
GO:0048936 IMP peripheral nervous system neuron axonogenesis
GO:0060052 IGI neurofilament cytoskeleton organization
GO:0061564 IMP axon development
GO:0097418 IEA neurofibrillary tangle
GO:1902513 IEA regulation of organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121861 prph-201 protein_coding Danio_rerio 6e-16 92
ENSDART00000154314 prph-001 protein_coding Danio_rerio 6e-16 92
ENSDART00000098108 viml-201 protein_coding Danio_rerio 0.000000000000002 90
ENST00000310624 NEFH-001 protein_coding Homo_sapiens 0 1947
ENST00000432563 RP5-1121H13.1-001 processed_pseudogene Homo_sapiens 0 998

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