C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peripherin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000121861 prph-201 ENSDARG00000028306 7955 - 11:3301708-3314835 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000121861
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000121861 0.492±0.00 0.520±0.14 0.567±0.00 0.164±0.00 0.303±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament
GO:0042246 IEP tissue regeneration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 2e-37 161
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 0.000000000008 77
ENSMUST00000093369 Nefh-001 protein_coding Mus_musculus 6e-16 92
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 3e-35 152
ENST00000257860 PRPH-001 protein_coding Homo_sapiens 0 379
ENST00000450021 KRT8P10-001 processed_pseudogene Homo_sapiens 2e-17 95
ENST00000451891 PRPH-002 protein_coding Homo_sapiens 0 222
ENST00000509735 KRT8P4-001 processed_pseudogene Homo_sapiens 3e-20 104
ENST00000533401 PRPH-006 retained_intron Homo_sapiens 0 202
ENST00000537252 PRPH-007 retained_intron Homo_sapiens 4e-25 119
ENST00000577607 KRT8P34-001 processed_pseudogene Homo_sapiens 0.00000000000002 84
ENST00000592443 KRT8P5-001 processed_pseudogene Homo_sapiens 2e-17 95

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