C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor RNA polymerase II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093454 Ell-201 ENSMUSG00000070002 10090 + 8:70539675-70592858 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093454 8.252±1.69 6.855±2.49 10.337±0.22 5.950±3.33 11.139±4.87 15.373±2.23 3.705±0.79 5.875±0.96 8.401±1.75 10.641±1.77 3.718±0.80 9.754±2.93 14.198±7.64 16.005±6.05

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005515 IEA protein binding
GO:0006368 IEA transcription elongation from RNA polymerase II promoter
GO:0008023 ISS transcription elongation factor complex
GO:0010923 ISS negative regulation of phosphatase activity
GO:0015030 ISS Cajal body
GO:0016607 ISS nuclear speck
GO:0019902 ISS phosphatase binding
GO:0032968 ISS positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 ISS transcriptionally active chromatin
GO:0035363 ISS histone locus body
GO:0042795 ISS snRNA transcription from RNA polymerase II promoter
GO:0042796 ISS snRNA transcription from RNA polymerase III promoter
GO:0045945 ISS positive regulation of transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262809 ELL-001 protein_coding Homo_sapiens 0 1343
ENST00000594635 ELL-002 nonsense_mediated_decay Homo_sapiens 0 1092
ENST00000596124 ELL-005 protein_coding Homo_sapiens 0 1151
ENST00000596915 ELL-007 retained_intron Homo_sapiens 0 233
ENST00000610152 ELL-009 retained_intron Homo_sapiens 9.80909e-45 183

Loading