C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: triadin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095762 Trdn-201 ENSMUSG00000019787 10090 + 10:33083483-33476709 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095762
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095762 0.167±0.11 1.169±0.79 0.045±0.04 9.006±5.32 0.049±0.00 4.120±0.43 0.312±0.25 0.010±0.01 0.604±0.46 153.490±12.54 0.327±0.21 0.002±0.00 0.113±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00067P CIL_00067P_0002 CGP 10:31689310-33476709
CIL_00068A CIL_00068A_0002 CGP 10:33083483-33624769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0010880 IEA regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0014070 IEA response to organic cyclic compound
GO:0014701 IEA junctional sarcoplasmic reticulum membrane
GO:0014808 IMP release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
GO:0014902 IEA myotube differentiation
GO:0016020 TAS membrane
GO:0016529 IEA sarcoplasmic reticulum
GO:0030314 IEA junctional membrane complex
GO:0031122 IEA cytoplasmic microtubule organization
GO:0034704 IEA calcium channel complex
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0051280 IEA negative regulation of release of sequestered calcium ion into cytosol
GO:0051281 IEA positive regulation of release of sequestered calcium ion into cytosol
GO:0060047 IMP heart contraction
GO:0090158 IEA endoplasmic reticulum membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334268 TRDN-001 protein_coding Homo_sapiens 0 1530
ENST00000542443 TRDN-201 protein_coding Homo_sapiens 0 806
ENST00000546248 TRDN-202 protein_coding Homo_sapiens 0 1033

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