C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095793 Rnf17-201 ENSMUSG00000000365 10090 + 14:56402697-56525032 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095793
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095793 0.083±0.04 0.097±0.06 0.074±0.01 0.061±0.04 0.094±0.00 0.028±0.02 0.016±0.01 0.172±0.13 0.013±0.00 0.012±0.00 0.200±0.16 1.254±0.74 11.251±4.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MG CIL_0004MG_0002 CGP 14:56365068-56525032
CIL_0000G6 CIL_0000G6_0003 CGP 14:56402697-56571846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007286 IMP spermatid development
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0042803 IPI protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255324 RNF17-003 protein_coding Homo_sapiens 0 3613
ENST00000255325 RNF17-004 protein_coding Homo_sapiens 0 721
ENST00000339524 RNF17-002 protein_coding Homo_sapiens 0 1227
ENST00000418120 RNF17-001 protein_coding Homo_sapiens 0 2590

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