C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: terminal uridylyl transferase 1, U6 snRNA-specific
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096239 Tut1-201 ENSMUSG00000071645 10090 + 19:8953850-8966207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096239 8.309±3.07 13.410±1.28 8.409±1.56 7.600±1.82 9.055±2.67 8.893±0.79 2.916±0.28 6.160±0.57 6.868±1.90 8.864±0.42 3.314±0.20 11.905±2.61 8.635±3.22 17.281±3.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0004652 ISS polynucleotide adenylyltransferase activity
GO:0005524 IEA ATP binding
GO:0005730 ISS nucleolus
GO:0005847 ISS mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 ISS mRNA polyadenylation
GO:0006379 ISS mRNA cleavage
GO:0016180 ISS snRNA processing
GO:0016607 ISS nuclear speck
GO:0046872 IEA metal ion binding
GO:0050265 ISS RNA uridylyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000308436 TUT1-201 protein_coding Homo_sapiens 0 1977
ENST00000476907 TUT1-001 protein_coding Homo_sapiens 0 1977
ENST00000494385 TUT1-003 protein_coding Homo_sapiens 0 664
ENST00000496634 MIR3654-001 nonsense_mediated_decay Homo_sapiens 0 1459

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