C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rod outer segment membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096242 Rom1-201 ENSMUSG00000071648 10090 - 19:8927382-8929356 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096242 6.603±0.33 67.072±1.63 5.441±0.21 1.537±0.49 8.280±2.20 6.530±0.74 11.347±3.00 6.361±1.09 2.797±0.84 6.995±0.44 3.649±0.75 10.115±4.33 9.439±6.86 7.404±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0003674 ND molecular_function
GO:0007155 IEA cell adhesion
GO:0007601 IEA visual perception
GO:0010468 IMP regulation of gene expression
GO:0016021 IEA integral component of membrane
GO:0042622 IDA photoreceptor outer segment membrane
GO:0060042 IMP retina morphogenesis in camera-type eye
GO:0060219 IMP camera-type eye photoreceptor cell differentiation
GO:0061298 IMP retina vasculature development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278833 ROM1-001 protein_coding Homo_sapiens 0 1245
ENST00000525801 ROM1-002 protein_coding Homo_sapiens 0 235
ENST00000525947 ROM1-004 protein_coding Homo_sapiens 0 355
ENST00000534093 ROM1-003 protein_coding Homo_sapiens 0 529

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