C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000096261 Polr2g-201 ENSMUSG00000071662 10090 - 19:8793129-8798557 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000096261
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000096261 29.789±9.08 24.140±2.93 33.757±6.62 43.834±13.02 27.251±3.97 14.976±0.67 27.648±0.83 36.752±1.50 29.782±22.78 24.659±1.65 25.092±2.35 33.111±16.29 57.233±22.61 22.910±3.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000291 IBA nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0000932 IBA cytoplasmic mRNA processing body
GO:0003697 IBA single-stranded DNA binding
GO:0003727 IBA single-stranded RNA binding
GO:0003899 IBA DNA-directed RNA polymerase activity
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0005730 IEA nucleolus
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006367 IBA transcription initiation from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0031369 IBA translation initiation factor binding
GO:0045948 IBA positive regulation of translational initiation
GO:0060213 IBA positive regulation of nuclear-transcribed mRNA poly(A) tail shortening

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000301788 POLR2G-001 protein_coding Homo_sapiens 0 691
ENST00000524819 POLR2G-002 nonsense_mediated_decay Homo_sapiens 0 540
ENST00000525455 POLR2G-006 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000526368 POLR2G-008 retained_intron Homo_sapiens 0 540
ENST00000527435 POLR2G-004 retained_intron Homo_sapiens 0 678
ENST00000531944 POLR2G-003 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000531996 POLR2G-007 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000533442 POLR2G-005 protein_coding Homo_sapiens 0 481

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