C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB18, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097680 Rab18-201 ENSMUSG00000073639 10090 + 18:6765205-6790231 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097680 18.827±3.28 21.954±2.37 39.998±2.05 29.779±9.64 14.394±1.21 17.966±1.82 15.952±6.07 24.861±4.36 26.830±5.46 26.337±3.90 28.191±8.44 21.669±8.30 31.194±8.10 9.244±2.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00077Z CIL_00077Z_0003 CGP 18:6765205-7004780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 ISS eye development
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0007420 ISS brain development
GO:0015031 IEA protein transport
GO:0019003 ISS GDP binding
GO:0034389 ISO lipid particle organization
GO:0070062 IEA extracellular vesicular exosome
GO:0071782 IEA endoplasmic reticulum tubular network
GO:0071786 IEA endoplasmic reticulum tubular network organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356940 RAB18-001 protein_coding Homo_sapiens 0 1194
ENST00000375802 RAB18-003 protein_coding Homo_sapiens 0 658
ENST00000423465 RAB18-005 protein_coding Homo_sapiens 0 536
ENST00000437408 RP11-241I20.5-001 processed_pseudogene Homo_sapiens 8.00001e-41 169
ENST00000465772 RAB18-004 processed_transcript Homo_sapiens 0 608
ENST00000484281 RAB18-006 processed_transcript Homo_sapiens 2e-40 169
ENST00000490236 RAB18-002 retained_intron Homo_sapiens 6e-19 99
ENST00000535776 RAB18-201 protein_coding Homo_sapiens 0 556
ENST00000611151 RAB18-202 protein_coding Homo_sapiens 0 865
ENST00000621805 RAB18-203 protein_coding Homo_sapiens 0 865

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