C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 19B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097874 Rnf19b-001 ENSMUSG00000028793 10090 + 4:129058814-129084526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097874
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097874 4.584±0.89 1.974±0.00 5.725±0.88 5.937±0.47 8.439±0.04 3.232±0.96 4.223±1.31 4.725±2.43 8.565±2.85 2.184±0.34 22.976±7.34 9.768±6.08 71.135±19.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097K CIL_00097K_0002 VISTA 4:128504346-129105789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding
GO:0042267 IMP natural killer cell mediated cytotoxicity
GO:0044194 IDA cytolytic granule
GO:0072643 IMP interferon-gamma secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235150 RNF19B-004 protein_coding Homo_sapiens 0 2274
ENST00000356990 RNF19B-002 protein_coding Homo_sapiens 0 1712
ENST00000373456 RNF19B-001 protein_coding Homo_sapiens 0 2501
ENST00000454567 AP000705.6-001 processed_pseudogene Homo_sapiens 0 267
ENST00000458209 RNF19BPY-001 processed_pseudogene Homo_sapiens 0 289
ENST00000572263 AP000705.6-001 processed_pseudogene Homo_sapiens 0 267

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