C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098180 Trim6-001 ENSMUSG00000072244 10090 + 7:104218795-104235152 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098180
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098180 0.485±0.18 0.177±0.06 0.085±0.04 0.040±0.00 0.385±0.19 0.838±0.00 0.201±0.10 0.138±0.09 0.251±0.12 0.241±0.04 0.041±0.02 0.548±0.16 14.827±9.38 0.917±0.55

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0008270 IEA zinc ion binding
GO:0070206 IEA protein trimerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000278302 TRIM6-001 protein_coding Homo_sapiens 0 1262
ENST00000354852 TRIM6-TRIM34-001 protein_coding Homo_sapiens 0 802
ENST00000380097 TRIM6-003 protein_coding Homo_sapiens 0 1262
ENST00000380107 TRIM6-002 protein_coding Homo_sapiens 0 1003
ENST00000424369 TRIM6-007 protein_coding Homo_sapiens 0 340
ENST00000445329 TRIM6-004 protein_coding Homo_sapiens 0 1027
ENST00000469187 TRIM6-005 retained_intron Homo_sapiens 0 756
ENST00000481603 TRIM6-006 processed_transcript Homo_sapiens 4e-30 137
ENST00000506134 TRIM6-008 protein_coding Homo_sapiens 0 870
ENST00000507320 TRIM6-011 protein_coding Homo_sapiens 0 798
ENST00000511284 TRIM6-012 processed_transcript Homo_sapiens 0 403
ENST00000515022 TRIM6-009 protein_coding Homo_sapiens 0 798
ENST00000618326 TRIM6-201 protein_coding Homo_sapiens 0 1020
ENST00000621176 TRIM6-202 protein_coding Homo_sapiens 0 1003

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