C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098950 Elavl1-201 ENSMUSG00000040028 10090 - 8:4284782-4325100 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098950 12.953±2.09 12.377±1.21 12.284±0.79 14.510±8.68 10.256±1.52 9.648±1.33 5.520±0.95 8.535±0.62 9.033±3.63 8.362±3.45 2.419±0.63 14.707±4.37 7.424±4.97 7.427±3.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002NQ CIL_0002NQ_0002 CGP 8:4259731-4325100
CIL_0000UT CIL_0000UT_0002 CGP 8:4284782-4360020

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 ISS RNA binding
GO:0003725 ISO double-stranded RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 ISS cytoplasm
GO:0016020 IEA membrane
GO:0017091 ISS AU-rich element binding
GO:0019901 IEA protein kinase binding
GO:0035925 ISO mRNA 3'-UTR AU-rich region binding
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IDA positive regulation of translation
GO:0048255 ISS mRNA stabilization
GO:0070935 ISS 3'-UTR-mediated mRNA stabilization
GO:2000036 IMP regulation of stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351593 ELAVL1-201 protein_coding Homo_sapiens 0 1384
ENST00000407627 ELAVL1-001 protein_coding Homo_sapiens 0 1445
ENST00000593807 ELAVL1-005 protein_coding Homo_sapiens 0 658
ENST00000596459 ELAVL1-002 protein_coding Homo_sapiens 0 1384

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