C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2N
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099329 Ube2n-201 ENSMUSG00000074781 10090 + 10:95515162-95545658 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099329
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099329 9.780±2.43 6.205±0.82 21.500±0.95 29.502±11.26 6.287±1.45 6.157±1.16 7.320±1.54 9.038±1.67 11.916±8.04 8.081±0.81 10.550±0.43 9.309±4.03 15.920±7.63 41.580±17.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051D CIL_00051D_0002 CGP 10:95515162-95564167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 ISS ubiquitin ligase complex
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0000729 ISS DNA double-strand break processing
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006301 ISS postreplication repair
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0016567 ISS protein ubiquitination
GO:0016574 ISS histone ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0031058 ISS positive regulation of histone modification
GO:0031372 ISS UBC13-MMS2 complex
GO:0033182 ISS regulation of histone ubiquitination
GO:0035370 ISS UBC13-UEV1A complex
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0043234 ISO protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045739 ISS positive regulation of DNA repair
GO:0050852 ISS T cell receptor signaling pathway
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0051443 ISS positive regulation of ubiquitin-protein transferase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070534 ISS protein K63-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318066 UBE2N-001 protein_coding Homo_sapiens 0 1661
ENST00000513791 RP11-485C11.1-001 processed_pseudogene Homo_sapiens 0 610
ENST00000517810 RP11-697N18.2-001 processed_pseudogene Homo_sapiens 0 678
ENST00000545592 UBE2NP1-001 processed_pseudogene Homo_sapiens 0 652
ENST00000549490 UBE2N-005 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000549833 UBE2N-002 protein_coding Homo_sapiens 0 1016
ENST00000550657 UBE2N-004 protein_coding Homo_sapiens 0 881
ENST00000552442 UBE2N-003 protein_coding Homo_sapiens 0 555
ENST00000616924 UBE2NL-001 transcribed_processed_pseudogene Homo_sapiens 0 673
ENST00000618570 UBE2NL-002 processed_transcript Homo_sapiens 0 1288

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