C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099393 Hps6-201 ENSMUSG00000074811 10090 + 19:46003478-46006173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099393
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099393 3.459±0.45 7.713±0.32 3.185±0.25 1.564±1.33 3.581±1.67 3.420±0.30 1.291±0.23 2.144±0.26 1.266±0.16 3.517±0.57 1.348±0.18 5.888±0.87 4.239±1.34 0.502±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099F CIL_00099F_0002 VISTA 19:45434459-46035623
CIL_00099E CIL_00099E_0002 VISTA 19:45446900-46047683
CIL_0005NL CIL_0005NL_0002 CGP 19:45818144-46006173
CIL_0005WD CIL_0005WD_0002 CGP 19:46003478-46045214

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IEA endosome
GO:0005783 IEA endoplasmic reticulum
GO:0006996 IMP organelle organization
GO:0007596 IMP blood coagulation
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0030318 IMP melanocyte differentiation
GO:0030742 IEA GTP-dependent protein binding
GO:0031084 IEA BLOC-2 complex
GO:0043473 IMP pigmentation
GO:0072657 IEA protein localization to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299238 HPS6-001 protein_coding Homo_sapiens 0 2082

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