C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: VCP-interacting membrane protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101801 Vimp-001 ENSMUSG00000075701 10090 + 7:66079649-66089412 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101801
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101801 32.381±3.04 171.525±11.80 33.727±5.93 24.315±4.28 47.455±23.99 99.546±17.83 17.037±2.51 44.164±3.70 63.271±20.96 85.881±28.74 15.162±1.79 85.622±32.68 108.059±25.24 52.715±14.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007CO CIL_0007CO_0002 CGP 7:66060299-66089412
CIL_0007CN CIL_0007CN_0002 CGP 7:66079649-66173789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002865 IEA negative regulation of acute inflammatory response to antigenic stimulus
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005881 ISS cytoplasmic microtubule
GO:0006983 IEA ER overload response
GO:0008430 IEA selenium binding
GO:0009749 IEA response to glucose
GO:0016209 IEA antioxidant activity
GO:0019899 IEA enzyme binding
GO:0030176 IEA integral component of endoplasmic reticulum membrane
GO:0030433 IEA ER-associated ubiquitin-dependent protein catabolic process
GO:0030968 IEA endoplasmic reticulum unfolded protein response
GO:0030970 IEA retrograde protein transport, ER to cytosol
GO:0032715 IMP negative regulation of interleukin-6 production
GO:0032720 IMP negative regulation of tumor necrosis factor production
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034362 IEA low-density lipoprotein particle
GO:0034599 IEA cellular response to oxidative stress
GO:0045454 IEA cell redox homeostasis
GO:0050728 IC negative regulation of inflammatory response
GO:0051771 IEA negative regulation of nitric-oxide synthase biosynthetic process
GO:0051775 IEA response to redox state
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0080164 IEA regulation of nitric oxide metabolic process
GO:1902236 IEA negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:2000110 IEA negative regulation of macrophage apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000526043 VIMP-003 retained_intron Homo_sapiens 0 564

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