C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007CO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000024651-ENSDARG00000070097 CGP 7955 7:10071551-10103115
GeneTranscriptPositionBiotype
ENSDARG00000024651 (snrpa1)
small nuclear ribonucleoprotein polypeptide A' 		ENSDART00000102584 (snrpa1-001) 10071587-10086203 nonsense_mediated_decay
ENSDART00000128530 (snrpa1-002) 10071551-10086201 protein_coding
ENSDART00000148818 (snrpa1-003) 10080262-10086203 retained_intron
ENSDART00000149146 (snrpa1-004) 10083232-10086151 retained_intron
ENSDARG00000070097 (vimp)
VCP-interacting membrane protein 		ENSDART00000084598 (vimp-001) 10089247-10103115 protein_coding
CIL_0007CO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030512-ENSMUSG00000075701 CGP 10090 7:66060299-66089412
GeneTranscriptPositionBiotype
ENSMUSG00000030512 (Snrpa1)
small nuclear ribonucleoprotein polypeptide A' 		ENSMUST00000032723 (Snrpa1-002) 66060544-66074580 nonsense_mediated_decay
ENSMUST00000123157 (Snrpa1-004) 66060299-66069526 processed_transcript
ENSMUST00000138271 (Snrpa1-005) 66060781-66062170 processed_transcript
ENSMUST00000139082 (Snrpa1-003) 66060564-66071612 retained_intron
ENSMUST00000147702 (Snrpa1-006) 66068852-66069523 retained_intron
ENSMUST00000153609 (Snrpa1-001) 66060338-66074582 protein_coding
ENSMUSG00000075701 (Vimp)
VCP-interacting membrane protein 		ENSMUST00000101801 (Vimp-001) 66079649-66089412 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CO_0001ENSDARG00000024651ENSDART00000102584ENSDART00000128530ENSDART00000148818ENSDART00000149146ENSDARG00000070097ENSDART00000084598CIL_0007CO_0002ENSMUSG00000030512ENSMUST00000032723ENSMUST00000123157ENSMUST00000138271ENSMUST00000139082ENSMUST00000147702ENSMUST00000153609ENSMUSG00000075701ENSMUST00000101801
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007CO_0001ENSDARG00000024651ENSDART00000102584ENSDART00000128530ENSDART00000148818ENSDART00000149146ENSDARG00000070097ENSDART00000084598CIL_0007CO_0002ENSMUSG00000030512ENSMUST00000032723ENSMUST00000123157ENSMUST00000138271ENSMUST00000139082ENSMUST00000153609ENSMUSG00000075701ENSMUST00000101801
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000024651 ENSDART00000102584 N/A N/A N/A N/A N/A N/A 7.182±0.00 17.628±0.00 N/A N/A 2.791±0.00 N/A N/A N/A
ENSDART00000128530 N/A N/A N/A 8.821±1.17 N/A N/A 8.428±2.82 16.133±0.00 4.201±0.00 N/A 4.967±0.00 N/A N/A N/A
ENSDART00000148818 N/A N/A N/A 6.230±1.79 N/A N/A N/A N/A 1.155±0.00 N/A N/A N/A N/A N/A
ENSDART00000149146 N/A N/A N/A 11.969±4.29 N/A N/A 5.570±0.65 4.297±0.51 N/A N/A N/A N/A N/A N/A
ENSDARG00000070097 ENSDART00000084598 N/A N/A N/A 20.857±5.59 N/A N/A 22.868±9.87 19.912±4.78 5.447±0.00 N/A 10.415±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030512 ENSMUST00000032723 2.996±0.67 4.931±1.79 3.148±0.00 7.259±2.20 2.336±0.95 4.325±1.60 3.078±0.54 3.502±1.08 6.065±3.37 4.066±1.13 1.427±0.30 4.259±1.35 4.595±0.00 8.775±1.27
ENSMUST00000123157 N/A N/A N/A N/A 4.695±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.044±0.00
ENSMUST00000139082 1.026±0.45 0.446±0.00 1.114±0.00 3.287±1.01 0.810±0.20 0.566±0.00 0.624±0.06 0.468±0.01 3.256±0.81 0.863±0.22 0.649±0.08 1.305±0.82 1.150±0.00 1.196±0.13
ENSMUST00000147702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153609 2.981±0.95 1.270±0.27 10.898±0.67 17.388±3.82 2.418±0.72 2.162±0.57 3.430±0.54 3.015±0.80 16.569±15.94 2.565±1.05 5.664±0.76 7.999±13.69 45.762±37.13 4.406±1.47
ENSMUSG00000075701 ENSMUST00000101801 32.381±3.04 171.525±11.80 33.727±5.93 24.315±4.28 47.455±23.99 99.546±17.83 17.037±2.51 44.164±3.70 63.271±20.96 85.881±28.74 15.162±1.79 85.622±32.68 108.059±25.24 52.715±14.13

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