C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ciliary rootlet coiled-coil, rootletin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102491 Crocc-002 ENSMUSG00000040860 10090 - 4:141016637-141053722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102491
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102491 1.488±0.73 0.752±0.26 3.615±0.42 5.175±2.48 1.014±0.40 0.425±0.00 5.880±1.11 0.350±0.01 1.242±0.46 0.131±0.00 8.845±1.87 1.121±0.42 1.096±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003WS CIL_0003WS_0002 CGP 4:141010418-141060550

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IDA structural molecule activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0005814 IDA centriole
GO:0005886 IEA plasma membrane
GO:0007049 IEA cell cycle
GO:0008104 IEA protein localization
GO:0010457 IEA centriole-centriole cohesion
GO:0015629 IEA actin cytoskeleton
GO:0019894 IPI kinesin binding
GO:0030030 IEA cell projection organization
GO:0033365 IEA protein localization to organelle
GO:0035253 IDA ciliary rootlet
GO:0051297 ISS centrosome organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263511 CROCCP3-002 processed_transcript Homo_sapiens 0 966
ENST00000375541 CROCC-001 protein_coding Homo_sapiens 0 5548
ENST00000420820 CROCCP3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1415
ENST00000426910 CROCCP1-001 processed_pseudogene Homo_sapiens 0 3701
ENST00000445545 CROCC-002 protein_coding Homo_sapiens 0 3485
ENST00000457096 CROCCP4-001 unprocessed_pseudogene Homo_sapiens 0 547
ENST00000465021 CROCC-014 processed_transcript Homo_sapiens 0 532
ENST00000466256 CROCC-003 processed_transcript Homo_sapiens 0 261
ENST00000467938 CROCC-004 protein_coding Homo_sapiens 0 2060
ENST00000477773 CROCC-013 processed_transcript Homo_sapiens 0 424
ENST00000486318 CROCC-011 processed_transcript Homo_sapiens 0 566
ENST00000492631 CROCC-005 processed_transcript Homo_sapiens 0 684
ENST00000494191 CROCC-006 retained_intron Homo_sapiens 0 601
ENST00000591316 CROCCP3-004 retained_intron Homo_sapiens 0 207
ENST00000591348 CROCCP3-003 processed_transcript Homo_sapiens 0 606

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