C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAP domain containing ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105230 Sarnp-201 ENSMUSG00000078427 10090 + 10:128821771-128877638 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105230
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105230 4.679±1.07 2.693±0.68 36.091±1.43 34.485±6.05 4.939±2.00 2.050±0.45 8.448±0.86 6.111±2.26 30.526±29.02 5.517±1.31 16.576±1.49 12.765±20.46 49.320±28.29 15.975±9.70

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 ISS transcription export complex
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006406 ISS mRNA export from nucleus
GO:0006417 IEA regulation of translation
GO:0016607 ISS nuclear speck

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336133 SARNP-002 protein_coding Homo_sapiens 0 896
ENST00000434352 AC073063.10-001 processed_pseudogene Homo_sapiens 0 612
ENST00000546604 SARNP-001 nonsense_mediated_decay Homo_sapiens 0 848
ENST00000546813 RP11-762I7.5-002 nonsense_mediated_decay Homo_sapiens 0.000000001 68
ENST00000546837 RP11-762I7.5-001 protein_coding Homo_sapiens 0 817
ENST00000548593 RP11-762I7.5-003 nonsense_mediated_decay Homo_sapiens 3e-32 143
ENST00000550124 RP11-762I7.5-004 nonsense_mediated_decay Homo_sapiens 0.0000000001 71
ENST00000552080 SARNP-005 protein_coding Homo_sapiens 0 765
ENST00000552207 SARNP-004 retained_intron Homo_sapiens 0 534
ENST00000552719 RP11-762I7.5-005 processed_transcript Homo_sapiens 0.00000000009 71
ENST00000552884 SARNP-003 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000552946 SARNP-006 retained_intron Homo_sapiens 0 248

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