C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group C, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105290 Nr2c1-001 ENSMUSG00000005897 10090 + 10:94148023-94197211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105290
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105290 3.085±1.09 2.446±0.23 5.997±0.73 3.756±2.53 2.050±0.39 1.924±0.48 1.343±0.16 1.963±0.50 2.630±1.02 4.026±0.50 1.078±0.28 4.962±1.45 1.364±0.91 2.570±1.18

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016605 IDA PML body
GO:0042803 IPI protein homodimerization activity
GO:0042826 IPI histone deacetylase binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0048386 IDA positive regulation of retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330677 NR2C1-004 protein_coding Homo_sapiens 0 1249
ENST00000333003 NR2C1-001 protein_coding Homo_sapiens 0 1711
ENST00000393101 NR2C1-002 protein_coding Homo_sapiens 0 1245
ENST00000545833 NR2C1-005 processed_transcript Homo_sapiens 0 1064
ENST00000546367 NR2C1-010 processed_transcript Homo_sapiens 0 207
ENST00000546416 NR2C1-014 retained_intron Homo_sapiens 0 412
ENST00000547469 NR2C1-009 protein_coding Homo_sapiens 0.0000000000001 81
ENST00000547594 NR2C1-013 processed_transcript Homo_sapiens 0 313
ENST00000548252 NR2C1-012 processed_transcript Homo_sapiens 0 459
ENST00000549482 NR2C1-008 retained_intron Homo_sapiens 0.000000000000004 86
ENST00000549617 NR2C1-016 retained_intron Homo_sapiens 0 320
ENST00000551386 NR2C1-006 processed_transcript Homo_sapiens 0.000000000000004 86
ENST00000551647 NR2C1-018 protein_coding Homo_sapiens 0 337
ENST00000552791 NR2C1-017 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000552861 NR2C1-003 retained_intron Homo_sapiens 0 466
ENST00000622476 NR2C1-201 protein_coding Homo_sapiens 0 1064

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