C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group C, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333003 NR2C1-001 ENSG00000120798 9606 - 12:95020229-95073703 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333003
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333003 0.552±0.00 0.468±0.00 0.537±0.10 0.978±0.00 0.450±0.00 0.578±0.23 1.068±0.00 0.521±0.00 0.979±0.58 0.322±0.10 1.555±0.87 0.396±0.07 1.541±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XY CIL_0000XY_0002 CGP 12:94897055-95073703
CIL_0005XD CIL_0005XD_0002 CGP 12:95020229-95217482

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 TAS DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004872 TAS receptor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016605 IEA PML body
GO:0042803 IEA protein homodimerization activity
GO:0042826 IEA histone deacetylase binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0048386 IEA positive regulation of retinoic acid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105290 Nr2c1-001 protein_coding Mus_musculus 0 1711
ENSMUST00000092213 Nr2c1-002 protein_coding Mus_musculus 0 1709
ENSMUST00000099343 Nr2c1-003 protein_coding Mus_musculus 0 1687

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