C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 5330417C22 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106625 5330417C22Rik-001 ENSMUSG00000040412 10090 - 3:108455694-108536536 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106625
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106625 0.219±0.11 0.478±0.25 0.019±0.00 1.456±0.83 0.191±0.11 11.430±2.10 0.086±0.07 0.041±0.04 0.047±0.03 8.714±0.27 0.009±0.00 0.918±0.50 0.023±0.00 11.147±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006914 IEA autophagy
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369936 KIAA1324-001 retained_intron Homo_sapiens 0 2459
ENST00000369938 KIAA1324-003 processed_transcript Homo_sapiens 0 2459
ENST00000369939 KIAA1324-002 protein_coding Homo_sapiens 0 3753
ENST00000457623 KIAA1324-006 protein_coding Homo_sapiens 0 2124
ENST00000464345 KIAA1324-005 retained_intron Homo_sapiens 2e-33 147
ENST00000490758 KIAA1324-011 retained_intron Homo_sapiens 0 649
ENST00000526264 KIAA1324-015 protein_coding Homo_sapiens 0 592
ENST00000527996 KIAA1324-009 nonsense_mediated_decay Homo_sapiens 0 3090
ENST00000529753 KIAA1324-008 protein_coding Homo_sapiens 0 2333
ENST00000531664 KIAA1324-013 protein_coding Homo_sapiens 0 795
ENST00000533147 KIAA1324-012 protein_coding Homo_sapiens 0 374
ENST00000534476 KIAA1324-014 protein_coding Homo_sapiens 0 579

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