C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 5330417C22 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040412 5330417C22Rik 10090 - 3:108455694-108536536 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048012 5330417C22Rik-201 108458069-108536517 protein_coding
  ENSMUST00000106625 5330417C22Rik-001 108455694-108536536 protein_coding
  ENSMUST00000106626 5330417C22Rik-002 108458175-108536527 protein_coding
  ENSMUST00000140357 5330417C22Rik-005 108463536-108464964 retained_intron
  ENSMUST00000148237 5330417C22Rik-003 108491932-108536459 retained_intron
  ENSMUST00000148493 5330417C22Rik-004 108467756-108470081 retained_intron
  ENSMUST00000185128 5330417C22Rik-006 108458069-108536522 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048012ENSMUST00000106625ENSMUST00000106626ENSMUST00000148493ENSMUST00000185128
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048012 0.253±0.25 0.866±0.29 0.085±0.03 1.057±0.22 0.248±0.09 31.502±1.90 0.223±0.20 0.048±0.01 0.056±0.03 13.234±0.51 N/A 2.002±1.21 0.243±0.34 36.372±15.06
ENSMUST00000106625 0.219±0.11 0.478±0.25 0.019±0.00 1.456±0.83 0.191±0.11 11.430±2.10 0.086±0.07 0.041±0.04 0.047±0.03 8.714±0.27 0.009±0.00 0.918±0.50 0.023±0.00 11.147±0.98
ENSMUST00000106626 0.120±0.00 0.708±0.08 0.045±0.00 N/A 0.364±0.14 23.602±2.24 0.245±0.07 0.077±0.02 0.047±0.02 6.564±1.47 N/A 1.542±0.44 0.036±0.00 18.238±5.20
ENSMUST00000148493 N/A N/A N/A N/A N/A N/A 0.130±0.00 N/A 0.216±0.11 N/A 0.099±0.01 N/A N/A N/A
ENSMUST00000185128 0.011±0.00 0.341±0.10 0.054±0.00 N/A 0.197±0.03 N/A 0.017±0.00 0.044±0.01 0.055±0.03 N/A N/A 0.315±0.00 0.047±0.02 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0005770 IEA late endosome
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0005886 IEA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006914 IEA autophagy
GO:0009267 IEA cellular response to starvation
GO:0016021 IEA integral component of membrane
GO:0016236 IEA macroautophagy
GO:0044090 IEA positive regulation of vacuole organization
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:2000786 IEA positive regulation of autophagic vacuole assembly
GO:2001240 IEA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042899 si:ch211-163l21.8 si:ch211-163l21.8 protein_coding Danio_rerio
ENSG00000116299 KIAA1324 KIAA1324 protein_coding Homo_sapiens

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