C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107211 Sytl2-002 ENSMUSG00000030616 10090 + 7:90348699-90410439 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonOvaryPlacentaTestisENSMUST00000107211
Transcript ID Bladder Breast Colon Ovary Placenta Testis
ENSMUST00000107211 14.720±2.58 0.427±0.17 1.882±0.00 0.308±0.04 0.104±0.00 0.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IE CIL_0004IE_0002 CGP 7:90223878-90410439

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001786 IEA phosphatidylserine binding
GO:0005515 IPI protein binding
GO:0005546 IEA phosphatidylinositol-4,5-bisphosphate binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IDA exocytosis
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0010923 ISS negative regulation of phosphatase activity
GO:0016020 IDA membrane
GO:0017137 IEA Rab GTPase binding
GO:0019897 IDA extrinsic component of plasma membrane
GO:0019902 ISS phosphatase binding
GO:0042043 IDA neurexin family protein binding
GO:0042470 IDA melanosome
GO:0070257 IMP positive regulation of mucus secretion
GO:0070382 IEA exocytic vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316356 SYTL2-004 protein_coding Homo_sapiens 0 2918
ENST00000354566 SYTL2-010 processed_transcript Homo_sapiens 0 1500
ENST00000359152 SYTL2-201 protein_coding Homo_sapiens 0 2918
ENST00000389958 SYTL2-011 protein_coding Homo_sapiens 0 1376
ENST00000389959 SYTL2-009 processed_transcript Homo_sapiens 0 1500
ENST00000389960 SYTL2-202 protein_coding Homo_sapiens 0 1411
ENST00000438197 SYTL2-006 retained_intron Homo_sapiens 0 1138
ENST00000524452 SYTL2-001 protein_coding Homo_sapiens 0 1404
ENST00000524911 SYTL2-030 protein_coding Homo_sapiens 0 344
ENST00000525423 SYTL2-008 processed_transcript Homo_sapiens 0 1727
ENST00000525692 SYTL2-028 retained_intron Homo_sapiens 0 470
ENST00000525702 SYTL2-016 protein_coding Homo_sapiens 0 1502
ENST00000526999 SYTL2-029 protein_coding Homo_sapiens 0 551
ENST00000527523 SYTL2-002 protein_coding Homo_sapiens 0 1500
ENST00000527794 SYTL2-018 protein_coding Homo_sapiens 0 501
ENST00000528231 SYTL2-007 protein_coding Homo_sapiens 0 2911
ENST00000528566 SYTL2-023 processed_transcript Homo_sapiens 7e-17 92
ENST00000529534 SYTL2-019 protein_coding Homo_sapiens 0 664
ENST00000529581 SYTL2-014 protein_coding Homo_sapiens 0 1500
ENST00000529662 SYTL2-026 retained_intron Homo_sapiens 0 708
ENST00000530351 SYTL2-012 processed_transcript Homo_sapiens 0 1205
ENST00000530894 SYTL2-031 processed_transcript Homo_sapiens 2e-16 90
ENST00000531496 SYTL2-027 retained_intron Homo_sapiens 0 708
ENST00000532221 SYTL2-025 protein_coding Homo_sapiens 0 368
ENST00000532995 SYTL2-013 nonsense_mediated_decay Homo_sapiens 0 1026
ENST00000533057 SYTL2-020 protein_coding Homo_sapiens 0 375
ENST00000533577 SYTL2-024 protein_coding Homo_sapiens 1e-20 104
ENST00000533892 SYTL2-015 protein_coding Homo_sapiens 0 1205
ENST00000534554 SYTL2-022 processed_transcript Homo_sapiens 2e-18 97

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