C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lectin, galactose binding, soluble 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108268 Lgals9-001 ENSMUSG00000001123 10090 - 11:78962974-78984946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108268
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108268 79.175±8.32 25.283±2.60 33.589±1.40 1.894±0.87 78.766±20.98 32.724±8.17 21.558±3.21 24.974±0.82 328.029±230.32 84.822±8.16 4.342±0.84 36.770±12.08 336.806±199.70 2.005±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SM CIL_0007SM_0002 VISTA 11:78750979-79355443
CIL_0006M1 CIL_0006M1_0002 CGP 11:78962974-79146407

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005737 IEA cytoplasm
GO:0007157 ISA heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0016936 ISA galactoside binding
GO:0030246 ISS carbohydrate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302228 LGALS9-002 protein_coding Homo_sapiens 0 664
ENST00000313648 LGALS9-005 protein_coding Homo_sapiens 0 407
ENST00000324290 LGALS9B-201 protein_coding Homo_sapiens 0 388
ENST00000328114 LGALS9C-001 protein_coding Homo_sapiens 0 370
ENST00000395473 LGALS9-001 protein_coding Homo_sapiens 0 313
ENST00000423676 LGALS9B-001 protein_coding Homo_sapiens 0 375
ENST00000448970 LGALS9-004 processed_transcript Homo_sapiens 0 244
ENST00000577265 LGALS9C-008 retained_intron Homo_sapiens 0 383
ENST00000577392 LGALS9-010 protein_coding Homo_sapiens 0 311
ENST00000577691 LGALS9C-005 nonsense_mediated_decay Homo_sapiens 0 241
ENST00000578481 LGALS9B-002 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000578563 LGALS9C-006 nonsense_mediated_decay Homo_sapiens 2e-25 119
ENST00000578983 LGALS9C-012 processed_transcript Homo_sapiens 0 250
ENST00000579290 AC015688.3-002 nonsense_mediated_decay Homo_sapiens 2e-22 110
ENST00000579773 LGALS9C-002 nonsense_mediated_decay Homo_sapiens 0 370
ENST00000579930 LGALS9-011 retained_intron Homo_sapiens 0 311
ENST00000580674 LGALS9C-004 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000581545 LGALS9C-003 protein_coding Homo_sapiens 0 418
ENST00000582333 LGALS9C-011 protein_coding Homo_sapiens 0 316
ENST00000583322 LGALS9C-014 protein_coding Homo_sapiens 0 686
ENST00000583671 LGALS9-012 retained_intron Homo_sapiens 0 313
ENST00000584127 LGALS9C-009 retained_intron Homo_sapiens 0 276
ENST00000584170 LGALS9C-013 retained_intron Homo_sapiens 0 318
ENST00000584386 LGALS9-013 retained_intron Homo_sapiens 0 318
ENST00000584605 AC015688.3-001 nonsense_mediated_decay Homo_sapiens 0 246
ENST00000584661 LGALS9-015 protein_coding Homo_sapiens 0 309
ENST00000584703 LGALS9B-003 nonsense_mediated_decay Homo_sapiens 1e-23 113
ENST00000584941 LGALS9C-015 protein_coding Homo_sapiens 0 324

Loading