C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: excision repair cross-complementing rodent repair deficiency, complementation group 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108461 Ercc2-002 ENSMUSG00000030400 10090 + 7:19382031-19395692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverLungOvaryPlacentaTestisENSMUST00000108461
Transcript ID Adrenal Brain Colon Liver Lung Ovary Placenta Testis
ENSMUST00000108461 14.627±2.83 5.463±0.00 6.266±0.00 2.544±0.32 6.221±0.00 7.535±3.13 3.094±0.51 1.916±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0003677 IEA DNA binding
GO:0004003 IEA ATP-dependent DNA helicase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006200 IEA ATP catabolic process
GO:0006281 IMP DNA repair
GO:0006289 IMP nucleotide-excision repair
GO:0006979 IMP response to oxidative stress
GO:0007568 IMP aging
GO:0008283 IMP cell proliferation
GO:0009411 IMP response to UV
GO:0009650 IMP UV protection
GO:0009791 IMP post-embryonic development
GO:0021510 IMP spinal cord development
GO:0022405 IMP hair cycle process
GO:0030198 IMP extracellular matrix organization
GO:0030282 IMP bone mineralization
GO:0032289 IMP central nervous system myelin formation
GO:0032508 IEA DNA duplex unwinding
GO:0035264 IMP multicellular organism growth
GO:0035315 IMP hair cell differentiation
GO:0040016 IMP embryonic cleavage
GO:0043249 IMP erythrocyte maturation
GO:0043388 IMP positive regulation of DNA binding
GO:0043588 IMP skin development
GO:0048820 IMP hair follicle maturation
GO:0060218 IMP hematopoietic stem cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391941 ERCC2-005 protein_coding Homo_sapiens 0 1820
ENST00000391942 ERCC2-007 retained_intron Homo_sapiens 0 1487
ENST00000391944 ERCC2-201 protein_coding Homo_sapiens 0 1925
ENST00000391945 ERCC2-001 protein_coding Homo_sapiens 0 1925
ENST00000391946 KLC3-001 protein_coding Homo_sapiens 1e-18 99
ENST00000470402 KLC3-002 protein_coding Homo_sapiens 1e-18 99
ENST00000585434 KLC3-004 protein_coding Homo_sapiens 1e-18 99
ENST00000587376 ERCC2-004 nonsense_mediated_decay Homo_sapiens 0 785
ENST00000588652 ERCC2-008 retained_intron Homo_sapiens 0 1260
ENST00000589373 KLC3-005 protein_coding Homo_sapiens 0.000000005 68

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