C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108597 Cldn7-002 ENSMUSG00000018569 10090 + 11:69964779-69967810 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108597
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108597 7.547±7.43 0.216±0.00 9.662±0.79 0.100±0.00 4.462±1.60 237.817±32.05 0.105±0.07 10.108±1.67 0.405±0.34 14.603±1.02 0.090±0.00 10.813±4.88 11.567±5.88 0.298±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0005923 IDA tight junction
GO:0016021 IEA:NAS integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016328 IDA lateral plasma membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000360325 CLDN7-001 protein_coding Homo_sapiens 0 778
ENST00000397317 CLDN7-003 protein_coding Homo_sapiens 0 778
ENST00000416158 RP11-169L17.3-001 processed_pseudogene Homo_sapiens 0 307
ENST00000538261 CLDN7-201 protein_coding Homo_sapiens 0 518
ENST00000571881 CLDN7-008 protein_coding Homo_sapiens 0 440
ENST00000571932 CLDN7-004 protein_coding Homo_sapiens 0 514
ENST00000574070 CLDN7-007 protein_coding Homo_sapiens 0 390
ENST00000575313 CLDN7-006 protein_coding Homo_sapiens 0 665
ENST00000577138 RP1-4G17.5-001 nonsense_mediated_decay Homo_sapiens 0 315

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