C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase long-chain family member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108905 Acsl6-008 ENSMUSG00000020333 10090 + 11:54304202-54364752 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLungMuscleOvaryENSMUST00000108905
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Lung Muscle Ovary
ENSMUST00000108905 0.008±0.00 0.283±0.08 0.056±0.01 6.398±0.90 0.121±0.03 0.468±0.18 0.023±0.00 0.071±0.01 2.068±0.18 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RF CIL_0007RF_0002 VISTA 11:53756663-54359415
CIL_00093D CIL_00093D_0002 VISTA 11:53760072-54361368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0001676 IEA long-chain fatty acid metabolic process
GO:0004467 IDA long-chain fatty acid-CoA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 IEA mitochondrial outer membrane
GO:0005777 IEA peroxisome
GO:0005783 IEA endoplasmic reticulum
GO:0006641 IEA triglyceride metabolic process
GO:0007405 IDA neuroblast proliferation
GO:0007584 IEA response to nutrient
GO:0008654 IEA phospholipid biosynthetic process
GO:0009629 IEA response to gravity
GO:0010747 IEA positive regulation of plasma membrane long-chain fatty acid transport
GO:0010867 IEA positive regulation of triglyceride biosynthetic process
GO:0010976 IEA positive regulation of neuron projection development
GO:0015908 IEA fatty acid transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019899 IEA enzyme binding
GO:0032869 IEA cellular response to insulin stimulus
GO:0042803 IEA protein homodimerization activity
GO:0048545 IEA response to steroid hormone
GO:0048666 IEA neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000084838 acsl6-201 protein_coding Danio_rerio 0 409
ENST00000296869 ACSL6-009 protein_coding Homo_sapiens 0 2828
ENST00000357096 ACSL6-201 protein_coding Homo_sapiens 0 1690
ENST00000379240 ACSL6-004 protein_coding Homo_sapiens 0 2841
ENST00000379244 ACSL6-008 protein_coding Homo_sapiens 0 2726
ENST00000379246 ACSL6-002 protein_coding Homo_sapiens 0 2876
ENST00000379255 ACSL6-003 protein_coding Homo_sapiens 0 1572
ENST00000379264 ACSL6-001 protein_coding Homo_sapiens 0 3096
ENST00000413683 ACSL6-006 nonsense_mediated_decay Homo_sapiens 0 2285
ENST00000414078 ACSL6-016 protein_coding Homo_sapiens 0 553
ENST00000416557 ACSL6-019 protein_coding Homo_sapiens 0 579
ENST00000419502 ACSL6-012 protein_coding Homo_sapiens 0 592
ENST00000430403 ACSL6-011 protein_coding Homo_sapiens 0 782
ENST00000431707 ACSL6-018 protein_coding Homo_sapiens 0 1868
ENST00000434099 ACSL6-005 protein_coding Homo_sapiens 0 1092
ENST00000441995 ACSL6-017 protein_coding Homo_sapiens 0 265
ENST00000484870 ACSL6-022 retained_intron Homo_sapiens 0 595
ENST00000493861 ACSL6-010 retained_intron Homo_sapiens 0 1622
ENST00000543479 ACSL6-202 protein_coding Homo_sapiens 0 1868

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