C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109308 Nfatc3-201 ENSMUSG00000031902 10090 + 8:106059603-106130537 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109308
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109308 10.592±2.15 12.998±6.39 8.278±0.84 2.951±1.56 17.164±7.40 15.243±2.72 3.107±0.98 7.538±0.43 8.972±1.48 11.358±1.14 3.451±0.96 16.350±6.47 8.773±3.13 3.835±2.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006A CIL_00006A_0002 CGP 8:106009621-106130537
CIL_00055Z CIL_00055Z_0002 CGP 8:106059603-106136974

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001569 IGI patterning of blood vessels
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007507 IGI heart development
GO:0045333 IMP cellular respiration
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051145 IGI smooth muscle cell differentiation
GO:0055001 IGI muscle cell development
GO:0071277 IDA cellular response to calcium ion
GO:0071285 IDA cellular response to lithium ion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329524 NFATC3-003 protein_coding Homo_sapiens 0 4058
ENST00000346183 NFATC3-002 protein_coding Homo_sapiens 0 4298
ENST00000349223 NFATC3-001 protein_coding Homo_sapiens 0 4152
ENST00000379165 NFATC3-004 retained_intron Homo_sapiens 0 4058
ENST00000535127 NFATC3-021 processed_transcript Homo_sapiens 0 3888
ENST00000539828 NFATC3-007 nonsense_mediated_decay Homo_sapiens 0 2113
ENST00000549350 NFATC3-005 retained_intron Homo_sapiens 0 3893
ENST00000553077 NFATC3-006 retained_intron Homo_sapiens 0 3888
ENST00000561714 NFATC3-010 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000562171 NFATC3-012 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000562926 NFATC3-017 protein_coding Homo_sapiens 0 3886
ENST00000563288 NFATC3-020 processed_transcript Homo_sapiens 0 3886
ENST00000563319 NFATC3-014 processed_transcript Homo_sapiens 0 3888
ENST00000563796 NFATC3-019 processed_transcript Homo_sapiens 0 3888
ENST00000565750 NFATC3-024 protein_coding Homo_sapiens 0 399
ENST00000566301 NFATC3-015 processed_transcript Homo_sapiens 0 3893
ENST00000566893 NFATC3-009 processed_transcript Homo_sapiens 0 532
ENST00000567152 NFATC3-018 processed_transcript Homo_sapiens 0 3973
ENST00000568466 NFATC3-011 nonsense_mediated_decay Homo_sapiens 0 296
ENST00000569766 NFATC3-013 processed_transcript Homo_sapiens 0 3973
ENST00000570212 NFATC3-016 protein_coding Homo_sapiens 0 3971
ENST00000575270 NFATC3-023 protein_coding Homo_sapiens 0 4180

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