C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00006A_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182810-ENSG00000072736 CGP 9606 16:68021274-68229259
GeneTranscriptPositionBiotype
ENSG00000182810 (DDX28)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 		ENST00000332395 (DDX28-001) 68021274-68023442 protein_coding
ENSG00000201850 (Y_RNA)
Y RNA 		ENST00000364980 (Y_RNA.1-502) 68089449-68089543 misc_RNA
ENSG00000212445 (SNORA48)
Small nucleolar RNA SNORA48 		ENST00000391143 (SNORA48.1-206) 68189287-68189421 snoRNA
ENSG00000221789 (AC130462.1)
 ENST00000408862 (AC130462.1-201) 68055779-68055884 miRNA
ENSG00000240435 (RPS12P27)
ribosomal protein S12 pseudogene 27 		ENST00000465542 (RPS12P27-001) 68209442-68209778 processed_pseudogene
ENSG00000260891 (RP11-96D1.5)
 ENST00000569088 (RP11-96D1.5-001) 68212401-68221671 antisense
ENSG00000262160 (RP11-96D1.11)
 ENST00000571197 (RP11-96D1.11-001) 68225969-68229145 antisense
ENSG00000262514 (RP11-96D1.9)
 ENST00000575953 (RP11-96D1.9-001) 68199795-68200981 sense_intronic
ENSG00000279621 (RP11-67A1.4)
 ENST00000624380 (RP11-67A1.4-001) 68199841-68200981 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00006A_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045538-ENSMUSG00000031902 CGP 10090 8:106009621-106130537
GeneTranscriptPositionBiotype
ENSMUSG00000031901 (Dus2)
dihydrouridine synthase 2 		ENSMUST00000034375 (Dus2-001) 106011507-106053819 protein_coding
ENSMUST00000119736 (Dus2-002) 106011507-106053840 nonsense_mediated_decay
ENSMUST00000138524 (Dus2-003) 106033390-106045992 retained_intron
ENSMUST00000141374 (Dus2-005) 106011522-106030883 retained_intron
ENSMUST00000142898 (Dus2-006) 105991337-106015842 protein_coding
ENSMUST00000144904 (Dus2-004) 106048708-106052199 retained_intron
ENSMUSG00000031902 (Nfatc3)
nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 		ENSMUST00000109308 (Nfatc3-201) 106059603-106130537 protein_coding
ENSMUSG00000045538 (Ddx28)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 		ENSMUST00000058579 (Ddx28-001) 106009621-106011882 protein_coding
ENSMUSG00000084128 (Esrp2)
epithelial splicing regulatory protein 2 		ENSMUST00000115979 (Esrp2-001) 106130319-106136974 protein_coding
ENSMUST00000125955 (Esrp2-004) 106133959-106134941 retained_intron
ENSMUST00000131020 (Esrp2-006) 106132815-106134724 retained_intron
ENSMUST00000139319 (Esrp2-007) 106133528-106134128 retained_intron
ENSMUST00000139559 (Esrp2-009) 106133268-106134128 retained_intron
ENSMUST00000142050 (Esrp2-008) 106132728-106133075 processed_transcript
ENSMUST00000146940 (Esrp2-005) 106132225-106136813 protein_coding
ENSMUST00000150527 (Esrp2-003) 106133802-106135096 retained_intron
ENSMUST00000155164 (Esrp2-002) 106136183-106136685 retained_intron
ENSMUSG00000093345 (Gm27956)
predicted gene, 27956 		ENSMUST00000175604 (Gm27956-201) 106071615-106071874 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006A_0001ENSG00000182810ENST00000332395ENSG00000201850ENST00000364980ENSG00000212445ENST00000391143ENSG00000221789ENST00000408862ENSG00000240435ENST00000465542ENSG00000260891ENST00000569088ENSG00000262160ENST00000571197ENSG00000262514ENST00000575953ENSG00000279621ENST00000624380CIL_00006A_0002ENSMUSG00000031901ENSMUST00000034375ENSMUST00000119736ENSMUST00000138524ENSMUST00000141374ENSMUST00000142898ENSMUST00000144904ENSMUSG00000031902ENSMUST00000109308ENSMUSG00000045538ENSMUST00000058579ENSMUSG00000084128ENSMUST00000115979ENSMUST00000125955ENSMUST00000131020ENSMUST00000139319ENSMUST00000139559ENSMUST00000142050ENSMUST00000146940ENSMUST00000150527ENSMUST00000155164ENSMUSG00000093345ENSMUST00000175604
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00006A_0001ENSG00000182810ENST00000332395ENSG00000201850ENST00000364980ENSG00000212445ENST00000391143ENSG00000221789ENST00000408862ENSG00000240435ENST00000465542ENSG00000260891ENST00000569088ENSG00000262160ENST00000571197ENSG00000262514ENST00000575953ENSG00000279621ENST00000624380CIL_00006A_0002ENSMUSG00000031901ENSMUST00000034375ENSMUST00000119736ENSMUSG00000031902ENSMUST00000109308ENSMUSG00000045538ENSMUST00000058579ENSMUSG00000084128ENSMUST00000115979ENSMUST00000146940ENSMUSG00000093345ENSMUST00000175604
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000182810 ENST00000332395 N/A N/A N/A 7.527±0.00 N/A N/A 6.101±0.00 N/A N/A N/A N/A 7.535±0.00 13.180±3.28 N/A
ENSG00000201850 ENST00000364980 N/A N/A N/A N/A N/A N/A 0.646±0.00 N/A 0.396±0.00 N/A N/A N/A N/A N/A
ENSG00000212445 ENST00000391143 N/A 0.540±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221789 ENST00000408862 N/A N/A N/A N/A 0.710±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000240435 ENST00000465542 0.042±0.00 0.216±0.00 N/A 0.268±0.00 0.365±0.06 0.080±0.00 0.080±0.00 0.086±0.00 0.039±0.00 1.069±0.00 0.386±0.00 0.359±0.08 N/A 0.110±0.00
ENSG00000260891 ENST00000569088 0.520±0.00 1.947±0.00 N/A 0.390±0.00 1.403±0.00 1.106±0.00 0.044±0.00 0.071±0.00 0.577±0.44 0.478±0.00 0.104±0.00 0.109±0.00 0.080±0.02 0.727±0.10
ENSG00000262160 ENST00000571197 11.495±0.00 21.665±0.00 N/A 4.187±0.00 11.364±5.72 15.086±0.00 3.080±1.61 8.005±3.22 10.683±7.06 11.103±1.47 16.094±13.60 10.599±4.43 18.775±0.00 32.778±11.60
ENSG00000262514 ENST00000575953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A 0.192±0.00
ENSG00000279621 ENST00000624380 0.147±0.00 0.666±0.00 0.277±0.00 0.084±0.00 0.312±0.17 0.383±0.08 0.097±0.01 0.073±0.00 0.037±0.00 0.082±0.06 0.226±0.00 0.071±0.05 0.074±0.00 0.131±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031901 ENSMUST00000034375 6.647±0.34 3.829±0.29 6.606±1.06 5.969±2.17 6.157±1.11 3.138±0.67 3.562±0.32 4.961±0.29 4.152±1.44 3.887±0.32 3.991±0.75 6.923±1.77 3.600±1.10 6.126±0.62
ENSMUST00000119736 N/A N/A N/A N/A N/A N/A N/A N/A 1.631±0.00 N/A 1.129±0.00 4.428±0.82 N/A N/A
ENSMUST00000138524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031902 ENSMUST00000109308 10.592±2.15 12.998±6.39 8.278±0.84 2.951±1.56 17.164±7.40 15.243±2.72 3.107±0.98 7.538±0.43 8.972±1.48 11.358±1.14 3.451±0.96 16.350±6.47 8.773±3.13 3.835±2.01
ENSMUSG00000045538 ENSMUST00000058579 6.097±0.36 7.965±1.08 6.669±0.97 6.411±0.77 9.067±2.66 4.380±0.57 2.876±0.37 4.112±0.38 5.993±1.37 4.344±0.47 4.274±0.33 8.499±1.02 4.608±0.51 2.736±0.37
ENSMUSG00000084128 ENSMUST00000115979 3.148±0.49 1.638±0.00 21.066±0.43 N/A 7.069±0.36 16.469±2.65 N/A 6.914±2.23 11.347±4.87 14.131±0.72 N/A 6.795±0.65 13.360±6.25 N/A
ENSMUST00000125955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.301±2.12 N/A
ENSMUST00000150527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093345 ENSMUST00000175604 N/A 0.984±0.48 0.332±0.07 2.506±1.42 1.237±0.81 0.592±0.00 0.399±0.00 0.329±0.00 1.558±2.20 N/A 0.527±0.00 1.588±1.15 0.592±0.14 0.612±0.46

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