C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aristaless-like homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000111254 Alx4-002 ENSMUSG00000040310 10090 + 2:93642388-93681339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000111254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000111254 0.014±0.00 0.062±0.03 0.016±0.00 0.075±0.02 0.439±0.18 0.026±0.01 0.036±0.00 0.018±0.01 0.004±0.00 0.018±0.00 0.034±0.00 0.083±0.06 0.039±0.00 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UN CIL_0008UN_0002 VISTA 2:93370139-93973617

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IPI transcription factor complex
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007389 IGI pattern specification process
GO:0007517 IMP muscle organ development
GO:0009791 IMP post-embryonic development
GO:0009952 IMP anterior/posterior pattern specification
GO:0035108 IMP limb morphogenesis
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0035116 IGI embryonic hindlimb morphogenesis
GO:0042733 IMP embryonic digit morphogenesis
GO:0042981 IGI regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0048565 IMP digestive tract development
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048705 IMP skeletal system morphogenesis
GO:0060021 IGI palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329255 ALX4-001 protein_coding Homo_sapiens 0 523

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